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standard error
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4
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standard error value (lfcSE) returned by DeSeq2
deseq2
deseq
lfc
lfcse
standard error
updated 7.1 years ago by
rraadd_8
• 0 • written 7.2 years ago by
tootiki
• 0
10
votes
11
replies
7.7k
views
Standard error and effect size from Limma
effect size
Limma
toptable
Standard Error
updated 8.8 years ago by
Gordon Smyth
50k • written 8.8 years ago by
Vani
▴ 20
9
votes
6
replies
10k
views
Error bars DESeq or DESeq2 fold change
rnaseq
deseq2
deseq
standard error
confidence interval
updated 2.5 years ago by
Michael Love
42k • written 8.1 years ago by
lisa.crossman
▴ 10
0
votes
6
replies
2.5k
views
paired analysis using metagenomeSeq
metagenomeseq
logfc
paired samples
standard error
updated 22 months ago by
tom830979
• 0 • written 7.7 years ago by
manasishah86
▴ 30
2
votes
4
replies
1.3k
views
Standard error of log2FC from DESeq in time series experiment
deseq2
log2fc
standard error
timecourse
updated 6.3 years ago by
ellascottgm
• 0 • written 6.3 years ago by
Verena
• 0
2
votes
4
replies
2.3k
views
Problem obtaining standard error from limma
limma
standard error
7.9 years ago
José Luis Lavín
▴ 10
0
votes
3
replies
2.0k
views
Standard errors of fitted values from glmFit in edgeR
edger
standard error
glmfit
7.9 years ago
david.hughes
• 0
7 results • Page
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Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
JKim
• 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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